PrivAS 1.0.4 (2021-09-21)

• PrivAS
  • Introduction
  • Security
  • On the importance of Quality Control
  • Performances
  • Evolutions
  • Availability
  • Contact
• GnomAD Binary Files
  • File Format
  • Download
• Client
  • Preamble
  • Launch the Client GUI
  • Performing Association Tests with PrivAS
    • 1. Load Variants
    • 2. Connect to a RPP Server
    • 3. Perform Association Tests
    • 4. Follow your Association Tests progress
    • 5. Visualize your results
  • The Main Window
  • PrivAS Client’s Command Lines
    • Main Command
      • Launch the Client GUI
    • Tools
      • Perform DEFAULT Quality Control on a VEP Annotated VCF file and convert the result to genotype file
      • Perform a Quality Control on a VCF file
      • Convert a QCed VEP Annotated VCF file to a genotypes file
      • Creates an annotation binary file from lists of GnomAD (exome/genome) VCF files
• Reference Panel Provider
  • Choose a data set
  • The Server configuration file
  • Run the default QC
  • PrivAS RPP’s Command Lines
    • Main Command
      • Launch the Reference Panel Provider Server
    • Tools
      • Perform DEFAULT Quality Control on a VEP Annotated VCF file and convert the result to genotype file
      • Perform a Quality Control on a VCF file
      • Convert a QCed VEP Annotated VCF file to a genotypes file
      • Creates an annotation binary file from lists of GnomAD (exome/genome) VCF files
• Third Party Server
  • Configuration
    • GetPublicRSAKey
    • LaunchAssociationTest
  • PrivAS TPS’s Command Lines
    • Main Command
      • Launch the Third-Party Server (should be called by the provided script, to manage scheduler issues)
    • Tools
      • Generate a keypair for the Third-Party Server
      • Compute a WSS Association Test (locally)
      • Compute a WSS Ranksum
• Changelog
  • 1.0.4 (2021-09-21)
    • Core
    • Client
    • RPP
    • TPS
  • 1.0.3 (2021-07-21)
    • Core
    • Client
    • RPP
    • TPS
  • 1.0.2 (2021-06-09)
    • Core
    • Client
    • RPP
    • TPS
  • 1.0.1 (2020-12-03)
    • Core
    • Client
    • RPP
    • TPS
  • 1.0.0 (2020-10-02)
    • Core
    • Client
    • RPP
    • TPS