PrivAS Logo
  • PrivAS
    • Introduction
    • Security
    • On the importance of Quality Control
    • Performances
    • Evolutions
    • Availability
    • Contact
  • GnomAD Binary Files
    • File Format
    • Download
  • Client
    • Preamble
    • Launch the Client GUI
    • Performing Association Tests with PrivAS
      • 1. Load Variants
      • 2. Connect to a RPP Server
      • 3. Perform Association Tests
      • 4. Follow your Association Tests progress
      • 5. Visualize your results
    • The Main Window
    • PrivAS Client’s Command Lines
      • Main Command
        • Launch the Client GUI
      • Tools
        • Perform DEFAULT Quality Control on a VEP Annotated VCF file and convert the result to genotype file
        • Perform a Quality Control on a VCF file
        • Convert a QCed VEP Annotated VCF file to a genotypes file
        • Creates an annotation binary file from lists of GnomAD (exome/genome) VCF files
  • Reference Panel Provider
    • Choose a data set
    • The Server configuration file
    • Run the default QC
    • PrivAS RPP’s Command Lines
      • Main Command
        • Launch the Reference Panel Provider Server
      • Tools
        • Perform DEFAULT Quality Control on a VEP Annotated VCF file and convert the result to genotype file
        • Perform a Quality Control on a VCF file
        • Convert a QCed VEP Annotated VCF file to a genotypes file
        • Creates an annotation binary file from lists of GnomAD (exome/genome) VCF files
  • Third Party Server
    • Configuration
      • GetPublicRSAKey
      • LaunchAssociationTest
    • PrivAS TPS’s Command Lines
      • Main Command
        • Launch the Third-Party Server (should be called by the provided script, to manage scheduler issues)
      • Tools
        • Generate a keypair for the Third-Party Server
        • Compute a WSS Association Test (locally)
        • Compute a WSS Ranksum
  • Changelog
    • 1.0.4 (2021-09-21)
      • Core
      • Client
      • RPP
      • TPS
    • 1.0.3 (2021-07-21)
      • Core
      • Client
      • RPP
      • TPS
    • 1.0.2 (2021-06-09)
      • Core
      • Client
      • RPP
      • TPS
    • 1.0.1 (2020-12-03)
      • Core
      • Client
      • RPP
      • TPS
    • 1.0.0 (2020-10-02)
      • Core
      • Client
      • RPP
      • TPS
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